| Segmenting long-range correlated sequences |
Segmentation of time series with long-range fractal correlations
The European Physical Journal B (in press) |
| DNAkeywords |
Clustering of DNA words and biological function: a proof of principle
Journal of Theoretical Biology 297: 127-136 [PDF]
http://dx.doi.org/10.1016/j.jtbi.2011.12.024 |
| "CITATION CLASSICS" DE LA UNIVERSIDAD DE GRANADA |
Hoja bibliométrica de la UGR, octubre 2011
IDEAL, 11 de octubre de 2011
Rodríguez F, Oliver JL, Marín A, Medina JR. 1990.
The General Stochastic-Model of Nucleotide Substitution. Journal of Theoretical Biology 142: 485-501 [PDF] |
Chromosome superstructures |
High-level organization of isochores into gigantic superstructures in the human genome
Physical Review E 83: 031908 (1-7)
http://dx.doi.org/10.1103/PhysRevE.83.031908 |
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Large-Scale DNA Patterns
Physical Review Focus: http://focus.aps.org/story/v27/st11 |
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WordCluster: detecting clusters of DNA words and genomic elements
Algorithms for Molecular Biology, 2011, 6:2
http://dx.doi.org/10.1186/1748-7188-6-2 |
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NGSmethDB: A database for next-generation sequencing single-cytosine-resolution DNA methylation data
Nucleic Acids Research 1–5, 2010 [NGSmethDB genome browser] [Data mining]
http://dx.doi.org/10.1093/nar/gkq942 |
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Prediction of CpG-island function: CpG clustering vs. sliding-window methods
BMC Genomics 11:327, 2010
http://dx.doi.org/10.1186/1471-2164-11-327
CpGcluster: A distance-based algorithm for CpG-island detection
BMC Bioinformatics 7: 446, 2006
http://dx.doi.org/10.1186/1471-2105-7-446
[Download CpGcluster] |
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Level statistics of words: finding keywords in literary texts and symbolic sequences
Physical Review E 79: 035102-4, 2009
http://dx.doi.org/10.1103/PhysRevE.79.035102
[TextKeywords database] |
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IsoFinder: computational prediction of isochores in genome sequences
Nucleic Acids Research 32: W287-W292
http://dx.doi.org/10.1093/nar/gkh399
[Download IsoFinder] |
| Online Resource on Isochore Mapping |
Oliver JL, Bernaola-Galván P, Carpena P, Román-Roldán R. 2001.
Isochore chromosome maps of eukaryotic genomes.
Gene 276: 47-56 [PDF] |
| Updated:
21-May-2013 |
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