Resources on Bioinformatics

• Higher Order Conditional Random Fields Aligner (HOCRFAlign): [matlab_tar.gz]
  Input: query protein sequence and PDB file of template protein. Output: estimated PDB file of query protein

Resources on Speech

• Uncertainty propagation on HMM+DNN: [matlab_tar.gz]
  Input: featuregram and uncertaintygram. Output: HmmLikelygram based on Monte-Carlo, Entire,.... uncertainty propagations.

• Speaker Localization (SpLoc) and Beamforming (BForm): [matlab_tar.gz]
  SpLoc based on Position and Pitch (PoPi) plane and BForm based on Delay and Sum (DS).

• Deep Belief Network Voice Activity Detector (DBN-VAD) and Room Localizer (RLoc): [matlab_tar.gz]
  From signal to DBN-VAD and RLoc. Training feature extraction, training and test are possible.

• Create embedded noisy (EmbNoisy) signals using dry (non-reverberated) clean isolated (DryIsoClean) signals, impulse responses (IRs) and noises (Noises): [matlab_tar.gz]
  From DryIsoClean to EmbNoisy folder at a specific SNR. For DryIsoClean, IRs and Noises ask DIRHA or FBK members.

• Vector Taylor Series Compensation (VTSComp): [matlab_tar.gz]
  VTSComp in filterbank (log-Mel) domain using a Gaussian Mixture Model (GMM). We generate a fake speech database to do training feature extraction, training and test.

• Some feature extractors used in my papers: [matlab_tar.gz]
  Assymetric Window, Sifting Autocorrelation, Tunnelling Noise, DTW pitch, etc..

• Basic Feature Extractor (FE): [matlab_tar.gz]
  From signal to segmentation, spectrogram, cepstrogram and cepstrogram+deltas.